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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL36A, ribosomal protein L36a
Sequence ID:NM_001199972
NM_021029
RefSeqGene ID:NG_012523
Entrez Gene ID:6173
Ensembl ID:ENSG00000241343

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 100645998 - 100648840

Transcript StartTranscript EndChromosomal Start Chromosomal End
187100645947100646033
88193100646446100646551
194261100646742100646809
262384100650322100650444
385451100650715100650781

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3353669Full LengthBC001781ribosomal protein L36a
4659712Full LengthBC031015ribosomal protein L36a
4774945Full LengthBC070204ribosomal protein L36a
6726961Full LengthBC062219ribosomal protein L36a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066357  NP_062543  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001032393 NP_001027565 P55795  
NM_001199972 NP_001186901    
NM_001199973 NP_001186902    
NM_001199974 NP_001186903    
NM_019597 NP_062543 P55795 RRM_1
zf-RNPHF
NM_021029 NP_066357 P83881 Ribosomal_L44

Related Sequences

 
mRNAGenPeptSwissProt
BC001781 AAH01781 P83881
BC031015 AAH31015 P83881
BC062219 AAH62219 P83881
BC070204 AAH70204 P83881
BC130343 AAI30344 P55795
BC130345 AAI30346 P55795
AY927233 AAX08138 P83881
HQ258235 ADR82989  
HQ258406 ADR83160  
D28414 BAA05780  
AK294144 BAG57470 B4DFK9
AK298133 BAG60412 B4DP00
CR542198 CAG46995 P83881

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL36A NP_066357 M.musculus Rpl36a 19982 Gene Info NP_063918 100
M.musculus Rpl36al 66483 Gene Info NP_079865 100
R.norvegicus Rpl36a 292964   NP_001121537 100
R.norvegicus Rpl36al 81769   NP_112367 100
C.elegans rpl-41 174695   NP_496375 81
D.melanogaster RpL36A 34098   NP_609179 77
A.thaliana AT4G14320 827074   NP_193168 77
A.gambiae AgaP_AGAP003538 4577344   XP_001230917 77
A.thaliana AT3G23390 821920   NP_188981 77
S.cerevisiae RPL42B 856544   NP_012010 76
S.cerevisiae RPL42A 855560   NP_014237 76
N.crassa NCU00706 3880689   XP_964540 75
S.pombe rpl42 2542789   NP_594304 74
P.falciparum PFC0200w 814362   XP_001351120 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)