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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. COX6B1, cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)
Sequence ID:NM_001863
RefSeqGene ID:NG_012193
Entrez Gene ID:1340
Ensembl ID:ENSG00000126267

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 36139227 - 36149549

NM_001863 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11813613912436139304
1822983614213436142250
2993993614547236145572
4005893614949536149684

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3344701Full LengthBC001015cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous)
3347455Full LengthBC002478cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001854  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001863 NP_001854 P14854 COX6B

Related Sequences

 
mRNAGenPeptSwissProt
BC001015 AAH01015 P14854
BC002478 AAH02478 P14854
BT006945 AAP35591 P14854
DQ893609 ABM84535  
DQ895078 ABM86004  
D28426 BAA05792  
AK312140 BAG35076 P14854
X13923 CAA32114 P14854
X54473 CAA38352 P14854
CR456789 CAG33070 P14854
CR542137 CAG46934 P14854

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COX6B1 NP_001854 M.musculus Cox6b1 110323 Gene Info NP_079904 85
R.norvegicus LOC688869 688869   NP_001138745 85
D.melanogaster CG14235 32989   NP_728294 62
N.crassa NCU11339 3879674   XP_963513 55
S.pombe cox12 2538835   NP_588322 54
A.thaliana COX6B 838851   NP_173661 50
S.cerevisiae COX12 850727   NP_013139 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)