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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C2orf40, chromosome 2 open reading frame 40
Sequence ID:NM_032411
Entrez Gene ID:84417
Ensembl ID:ENSG00000119147

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2q12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 106682112 - 106694605

NM_032411 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1187106682112106682298
188235106688299106688346
236393106690341106690498
394774106694220106694600

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5260075Full LengthBC021742chromosome 2 open reading frame 40

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_032411 NP_115787 Q9H1Z8  

Related Sequences

 
mRNAGenPeptSwissProt
AF325503 AAG42321 Q9H1Z8
BC021742 AAH21742 Q9H1Z8
AY358601 AAQ88964 Q9H1Z8
DQ892412 ABM83338  
DQ895626 ABM86552  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C2orf40 NP_115787 M.musculus 1500015O10Rik 78896 Gene Info NP_077245 84
R.norvegicus RGD1305645 363225   XP_343563 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)