Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLNS1A, chloride channel, nucleotide-sensitive, 1A
Sequence ID:NM_001293
Entrez Gene ID:1207
Ensembl ID:ENSG00000074201

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.5-q14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 77327261 - 77348789

NM_001293 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
75507732719677327739
5516407733065077330739
6418147733354477333717
8159227733600777336114
92310247733676177336862
102511617734080777340943
116213787734863477348850

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40115653Full LengthBC119634chloride channel, nucleotide-sensitive, 1A
40115655Full LengthBC119635chloride channel, nucleotide-sensitive, 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001284  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001293 NP_001284 P54105 ICln_channel

Related Sequences

 
mRNAGenPeptSwissProt
U53454 AAB03316 P54105
AF005422 AAB61444 P54105
AF026003 AAB88806 P54105
U17899 AAC50111 P54105
BC119634 AAI19635 P54105
BC119635 AAI19636 P54105
BT019907 AAV38710 P54105
AK315259 BAG37676 P54105
X91788 CAA62902 P54105

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLNS1A NP_001284 M.musculus Clns1a 12729 Gene Info NP_076160 91
R.norvegicus Clns1a 65160   NP_113907 91
C.elegans icl-1 177730   NP_001021287 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)