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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NUP54, nucleoporin 54kDa
Sequence ID:NM_017426
Entrez Gene ID:53371
Ensembl ID:ENSG00000138750

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 77035816 - 77069552

 Exon Info From UCSC:
NM_017426

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062168Full LengthBC156685nucleoporin 54kDa
3931652IncompleteBC012559nucleoporin 54kDa

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017426 NP_059122 Q7Z3B4  

Related Sequences

 
mRNAGenPeptSwissProt
AF157322 AAF67488 Q7Z3B4
BC156685 AAI56686  
DQ895978 ABM86904  
EU176395 ABW03846  
AK001517 BAA91735 Q7Z3B4
AK222752 BAD96472 Q53H29
AK223352 BAD97072 Q53FD7
AK315160 BAG37604 Q7Z3B4
AK299442 BAG61417 B4DRV5
AK300036 BAG61847 B4DT35
AL137650 CAB70859 Q9NSY5
BX538002 CAD97957 Q7Z3B4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NUP54 NP_059122 R.norvegicus Nup54 53372   NP_059057 96
M.musculus Nup54 269113 Gene Info NP_899248 96
D.melanogaster Nup54 36360   NP_610783 43
A.gambiae AgaP_AGAP006031 1276703   XP_316078 41
C.elegans npp-1 177836   NP_501770 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)