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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SDF4, stromal cell derived factor 4
Sequence ID:NM_016176
NM_016547
RefSeqGene ID:NG_030007
Entrez Gene ID:51150
Ensembl ID:ENSG00000078808

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 1152891 - 1167368

 Exon Info From UCSC:
NM_016176
NM_016547

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3162764Full LengthBC006211stromal cell derived factor 4
3503540Full LengthBC007625stromal cell derived factor 4
3622725Full LengthBC008917stromal cell derived factor 4
4153655Full LengthBC011244stromal cell derived factor 4
4839718Full LengthBC022375stromal cell derived factor 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057631  NP_057260  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016176 NP_057260 Q9BRK5 efhand
NM_016547 NP_057631   efhand

Related Sequences

 
mRNAGenPeptSwissProt
AF153686 AAD51612 Q9BRK5
AF178986 AAF44350 Q9BRK5
BC006211 AAH06211 Q9BRK5
BC007625 AAH07625 Q9BRK5
BC008917 AAH08917 Q9BRK5
BC011244 AAH11244 Q9BRK5
BC022375 AAH22375 Q9BRK5
L79912 AAL40084 Q9BRK5
AF132749 AAL75950 Q9BRK5
HQ448229 ADQ32709  
AK027277 BAB55012 Q9BRK5
AK075352 BAC11563 Q9BRK5
AK222521 BAD96241 Q9BRK5
AK223079 BAD96799 Q9BRK5
AK315517 BAG37898 Q9BRK5
AK299810 BAG61683 Q9BRK5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SDF4 NP_057260 M.musculus Sdf4 20318 Gene Info NP_035471 87
R.norvegicus Sdf4 155173   NP_569096 87
A.gambiae AgaP_AGAP002810 1273151   XP_312103 37
D.melanogaster CG31475 42303   NP_732406 34
C.elegans C56C10.9 183859   NP_495338 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)