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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PBX3, pre-B-cell leukemia homeobox 3
Sequence ID:NM_001134778
NM_006195
NR_024122
NR_024123
Entrez Gene ID:5090
Ensembl ID:ENSG00000167081

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q33.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 128509732 - 128728202

 Exon Info From UCSC:
NM_001134778
NM_006195

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5212090Full LengthBC094883pre-B-cell leukemia homeobox 3
4447228IncompleteBC016977pre-B-cell leukemia homeobox 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006186  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001134778 NP_001128250    
NM_006195 NP_006186 P40426 Homeobox
PBC

Related Sequences

 
mRNAGenPeptSwissProt
BC016977 AAH16977 Q96AL5
BC094883 AAH94883 P40426
AF355141 AAL09477 P40426
AF355142 AAL09478 P40426
AK289376 BAF82065 P40426
AK297093 BAH12495 B7Z4A9
AK299267 BAH12986 B7Z5Q0
X59841 CAA42502 P40426

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PBX3 NP_006186 M.musculus Pbx3 18516 Gene Info NP_058048 100
R.norvegicus Pbx3 311876   NP_001101304 100

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)