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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LSM1, LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Sequence ID:NM_014462
Entrez Gene ID:27257
Ensembl ID:ENSG00000175324

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 38020860 - 38033999

NM_014462 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
195163802086038021357
5176323802731938027434
6337013802948238029550
7029353803379238034025

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3353833Full LengthBC001767LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055277  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014462 NP_055277 O15116 LSM

Related Sequences

 
mRNAGenPeptSwissProt
AF000177 AAB62189 O15116
BC001767 AAH01767 O15116
AK312159 BAG35093 O15116
AJ238094 CAB45865 O15116

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LSM1 NP_055277 M.musculus Lsm1 67207 Gene Info NP_080308 98
R.norvegicus Lsm1 364624   NP_001102346 98
D.melanogaster LSm1 37413   NP_611559 64
A.gambiae AgaP_AGAP001686 1281490   XP_321407 58
C.elegans lsm-1 174700   NP_496385 56
A.thaliana AT1G19120 838495   NP_564072 53
S.cerevisiae LSM1 853318   NP_012411 49
S.pombe lsm1 2540520   NP_595520 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)