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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPL29, ribosomal protein L29
Sequence ID:NM_000992
Entrez Gene ID:6159
Ensembl ID:ENSG00000162244

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.3-p21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 52027644 - 52029911

NM_000992 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
445415202764452028141
5426065202905752029121
6076515202944052029484
6527375202987252029957

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3835176Full LengthBC008926ribosomal protein L29
5220693Full LengthBC071663ribosomal protein L29
6025704Full LengthBC070481ribosomal protein L29
6452382Full LengthBC070190ribosomal protein L29
6729601Full LengthBC071909ribosomal protein L29

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000983  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000992 NP_000983 P47914 Ribosomal_L29e

Related Sequences

 
mRNAGenPeptSwissProt
U10248 AAC50499 P47914
U49083 AAC50647 P47914
BC008926 AAH08926 P47914
BC070190 AAH70190 P47914
BC070481 AAH70481 P47914
BC071663 AAH71663 P47914
BC071909 AAH71909 Q6IPI1
DQ893227 ABM84153  
D28412 BAA05778  
AK289538 BAF82227 P47914
AK311884 BAG34825 P47914
Z49148 CAA89008 P47914

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL29 NP_000983 M.musculus LOC100503055 100503055   XP_003085375 84
M.musculus Rpl29 19944 Gene Info NP_033108 83
M.musculus Gm6344 622707 Gene Info XP_001475761 83
M.musculus Gm10709 100039782 Gene Info XP_001473361 83
M.musculus Gm8210 666642   XP_990228 83
M.musculus Gm13841 665032   XP_979163 83
R.norvegicus Rpl29 29283   NP_058846 82
M.musculus Gm12508 670211   XP_001476205 81
M.musculus Gm5561 433941 Gene Info XP_001478414 81
R.norvegicus RGD1565306 500645   XP_576023 81
M.musculus Gm10913 100503125   XP_003085154 80
M.musculus Gm3550 100041859 Gene Info XP_001477526 80
M.musculus Gm17669 100504629 Gene Info XP_003085263 80
M.musculus Gm5218 383080 Gene Info XP_356848 79
R.norvegicus RGD1564980 500019   XP_575373 79
M.musculus Gm13213 545683   XP_620107 78
M.musculus Gm11449 383770   XP_357236 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)