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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MSX1, msh homeobox 1
Sequence ID:NM_002448
RefSeqGene ID:NG_008121
Entrez Gene ID:4487
Ensembl ID:ENSG00000163132

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
OROFACIAL CLEFT 5 
TOOTH AGENESIS, SELECTIVE, 1, WITH OR WITHOUT OROFACIAL CLEFTPAX9
PAX9
WITKOP SYNDROME 

Cytogenetic Location (from UniGene)

Cytogenetic Location:4p16.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 4861392 - 4865202

NM_002448 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
170448613914862094
705193548644274865657

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4893288Full LengthBC067353msh homeobox 1
5018103Full LengthBC021285msh homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002439  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002448 NP_002439 P28360 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
M97676 AAA52683 P28360
BC021285 AAH21285 P28360
BC067353 AAH67353 P28360
AK290636 BAF83325 A8K3M1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MSX1 NP_002439 M.musculus Msx1 17701 Gene Info NP_034965 94
R.norvegicus Msx1 81710   NP_112321 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)