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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PSMB5, proteasome (prosome, macropain) subunit, beta type, 5
Sequence ID:NM_001130725
NM_001144932
NM_002797
Entrez Gene ID:5693
Ensembl ID:ENSG00000100804

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 23495064 - 23504119

 Exon Info From UCSC:
NM_001130725
NM_001144932
NM_002797

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4795732Full LengthBC057840proteasome (prosome, macropain) subunit, beta type, 5
6738409Full LengthBC107720proteasome (prosome, macropain) subunit, beta type, 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002788  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001130725 NP_001124197      
NM_001144932 NP_001138404      
NM_002797 NP_002788 P28074 EC 3.4.25.1 Proteasome

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
S74378 AAB33092 P28074 EC 3.4.25.1
BC057840 AAH57840 P28074 EC 3.4.25.1
BC107720 AAI07721 P28074 EC 3.4.25.1
BT006777 AAP35423 P28074 EC 3.4.25.1
HQ448536 ADQ33015    
AK311895 BAG34836 P28074 EC 3.4.25.1
AK300714 BAG62391 P28074 EC 3.4.25.1
BX248299 CAD62626 P28074 EC 3.4.25.1
BX538001 CAD97956 P28074 EC 3.4.25.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMB5 NP_002788 M.musculus Psmb5 19173 Gene Info NP_035316 95
R.norvegicus Psmb5 29425   NP_001099197 94
N.crassa NCU09309 3880100   XP_963951 68
S.cerevisiae PRE2 856218   NP_015428 67
D.melanogaster Prosbeta5 45269   NP_652014 65
S.pombe pts1 2543623   NP_593825 65
A.gambiae AgaP_AGAP010718 1272519   XP_559226 63
A.thaliana AT3G26340 822238   NP_189265 61
A.thaliana PBE1 837863   NP_172765 60
P.falciparum PF10_0111 810269   XP_001347396 54
C.elegans pbs-5 173334   NP_493558 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta