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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PAX3, paired box 3
Sequence ID:NM_000438
NM_001127366
NM_013942
NM_181457
NM_181458
NM_181459
NM_181460
NM_181461
RefSeqGene ID:NG_011632
Entrez Gene ID:5077
Ensembl ID:ENSG00000135903

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CRANIOFACIAL-DEAFNESS-HAND SYNDROME 
RHABDOMYOSARCOMA 2, ALVEOLARFOXO1
PAX7
WAARDENBURG SYNDROME, TYPE 1 
WAARDENBURG SYNDROME, TYPE3 

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q35Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 223065704 - 223163715

 Exon Info From UCSC:
NM_000438
NM_001127366
NM_013942
NM_181457
NM_181458
NM_181459
NM_181460
NM_181461

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40024655Full LengthBC101299paired box 3
40024656Full LengthBC101300paired box 3
40024658Full LengthBC101301paired box 3
40024661Full LengthBC101302paired box 3
40024665Full LengthBC114363paired box 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_852124  NP_852126  NP_039230  NP_000429  NP_852123  NP_852122  NP_852125  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000438 NP_000429   PAX
NM_001127366 NP_001120838    
NM_013942 NP_039230   PAX
NM_181457 NP_852122 P23760 Homeobox
PAX
NM_181458 NP_852123   Homeobox
PAX
NM_181459 NP_852124   Homeobox
PAX
NM_181460 NP_852125   Homeobox
PAX
NM_181461 NP_852126   Homeobox
PAX

Related Sequences

 
mRNAGenPeptSwissProt
U02309 AAA03628 Q12777
S69369 AAB30167 P23760
S69370 AAB30168 P23760
BC063547 AAH63547 P23760
BC101299 AAI01300 P23760
BC101300 AAI01301 P23760
BC101301 AAI01302 P23760
BC101302 AAI01303 P23760
BC114363 AAI14364 P23760
AY251279 AAP13872 P23760
AY251280 AAP13873 P23760
EU446645 ABZ92174  
AK291278 BAF83967 P23760

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PAX3 NP_852124 M.musculus Pax3 18505 Gene Info NP_001152992 99
R.norvegicus Pax3 114502   NP_446162 99
D.melanogaster prd 34629   NP_723721 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta