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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IK, IK cytokine, down-regulator of HLA II
Sequence ID:NM_006083
Entrez Gene ID:3550
Ensembl ID:ENSG00000113141

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 140027383 - 140042065

 Exon Info From UCSC:
NM_006083

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3030079Full LengthBC013005IK cytokine, down-regulator of HLA II
6461871Full LengthBC071964IK cytokine, down-regulator of HLA II
3635553IncompleteBC051295IK cytokine, down-regulator of HLA II

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006074  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006083 NP_006074 Q13123 RED_C
RED_N

Related Sequences

 
mRNAGenPeptSwissProt
S74221 AAB32531 Q13123
AF182645 AAD55447 Q9UK43
AY007094 AAG01985 Q9H4P6
BC013005 AAH13005 Q95HA6
BC071964 AAH71964 Q13123
AK312363 BAG35281 B2R5Y4
AK293626 BAG57083 B4DEH2
AJ005579 CAA06607 Q13123
AL050296 CAB43395 Q9Y3Z5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IK NP_006074 R.norvegicus Ik 291659   NP_001005537 99
M.musculus Ik 24010 Gene Info NP_036009 98
D.melanogaster CG18005 41091   NP_649865 58
A.gambiae AgaP_AGAP004738 1278487   XP_318083 56
C.elegans smu-2 173693   NP_494559 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)