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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ABCA2, ATP-binding cassette, sub-family A (ABC1), member 2
Sequence ID:NM_001606
NM_212533
RefSeqGene ID:NG_011789
Entrez Gene ID:20
Ensembl ID:ENSG00000107331

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 139901685 - 139912525

 Exon Info From UCSC:
NM_001606
NM_212533

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069142Full LengthBC172448ATP-binding cassette, sub-family A (ABC1), member 2
3344721IncompleteBC008755ATP-binding cassette, sub-family A (ABC1), member 2
5734084IncompleteBC064542ATP-binding cassette, sub-family A (ABC1), member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001597  NP_997698  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001606 NP_001597   ABC_tran
NM_212533 NP_997698   ABC_tran

Related Sequences

 
mRNAGenPeptSwissProt
U18235 AAA84436 Q13038
U18236 AAA84437 Q13039
AF178941 AAG09372 Q9BZC7
BC008755 AAH08755 Q96HC2
BC064542 AAH64542 Q6P2G5
BC109244 AAI09245 Q08EJ9
BC172448 AAI72448  
AF327657 AAK14334 Q9BZC7
AB028985 BAA83014 Q9BZC7
AB177854 BAD66832 Q9BZC7
AK295489 BAG58411 B4DI99
AL162060 CAB82398 Q9UPU0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ABCA2 NP_001597 R.norvegicus Abca2 79248   NP_077372 93
M.musculus Abca2 11305 Gene Info NP_031405 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)