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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HIF3A, hypoxia inducible factor 3, alpha subunit
Sequence ID:NM_022462
NM_152794
NM_152795
NM_152796
RefSeqGene ID:NG_029679
Entrez Gene ID:64344
Ensembl ID:ENSG00000124440

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 46806924 - 46842879

 Exon Info From UCSC:
NM_022462
NM_152794
NM_152795

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4811824Full LengthBC026308hypoxia inducible factor 3, alpha subunit
6250259Full LengthBC080551hypoxia inducible factor 3, alpha subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_690007  NP_071907  NP_690008  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022462 NP_071907   PAS
PAS_3
NM_152794 NP_690007 Q9Y2N7 PAS
PAS_3
NM_152795 NP_690008 Q9Y2N7 PAS
PAS_3
NM_152796 NP_690009    

Related Sequences

 
mRNAGenPeptSwissProt
AF079154 AAC99397 O95262
BC026308 AAH26308 I6L988
BC080551 AAH80551 Q9Y2N7
AF463492 AAL69947 Q9Y2N7
AK021421 BAB13819 Q9HAM5
AK021653 BAB13865 Q9Y2N7
AK024095 BAB14824 Q9Y2N7
AK027725 BAB55324 Q9Y2N7
AB054067 BAB69689 Q9Y2N7
AB118749 BAD93355 Q9Y2N7
AB295039 BAG07185 Q9Y2N7
AK314680 BAG37233 B2RBI6
AK297828 BAG60164 Q9Y2N7
AK299699 BAG61601 B4DSD9
AK304747 BAG65505 B4E3J3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HIF3A NP_690008 M.musculus Hif3a 53417 Gene Info NP_001156422 83
R.norvegicus Hif3a 64345   NP_071973 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)