Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GPATCH2, G patch domain containing 2
Sequence ID:NM_018040
Entrez Gene ID:55105
Ensembl ID:ENSG00000092978

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q41Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 217603833 - 217804409

NM_018040 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1874217603833217604706
875963217622590217622678
9641034217665021217665091
10351074217671697217671736
10751142217688163217688230
11431222217783662217783741
12231405217784230217784412
14061467217787482217787543
14682184217793124217793840
21852336217804257217804408

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5206348Full LengthBC063474G patch domain containing 2
5532608Full LengthBC042193G patch domain containing 2
4589911IncompleteBC027719G patch domain containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060510  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018040 NP_060510 Q9NW75 G-patch

Related Sequences

 
mRNAGenPeptSwissProt
BC027719 AAH27719 Q6PIX0
BC042193 AAH42193 Q9NW75
BC063474 AAH63474 Q9NW75
AK001114 BAA91509 Q9NW75
AK291238 BAF83927 A8K5C3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GPATCH2 NP_060510 M.musculus Gpatch2 67769 Gene Info NP_080643 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)