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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MRPL39, Mitochondrial ribosomal protein L39
Sequence ID:NM_080794
NM_017446
Entrez Gene ID:54148
Ensembl ID:ENSG00000154719

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:21q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 26957967 - 26979775

 Exon Info From UCSC:
NM_080794
NM_017446

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6737868Full LengthBC107719mitochondrial ribosomal protein L39
3529006IncompleteBC004896mitochondrial ribosomal protein L39

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017446 NP_059142 Q9NYK5  
NM_080794 NP_542984    

Related Sequences

 
mRNAGenPeptSwissProt
AF239727 AAF44696 Q9NYK5
BC004896 AAH04896 Q9NYK5
BC107719 AAI07720 Q9NYK5
AF270511 AAK12856 Q9NYK5
AF109357 AAQ13505 Q9NYK5
AK000458 BAA91177 Q9NYK5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MRPL39 NP_059142 M.musculus Mrpl39 27393 Gene Info NP_059100 89
D.melanogaster mRpL39 39627   NP_524075 43
A.gambiae AgaP_AGAP010644 1272552   XP_311362 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)