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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CDHR2, cadherin-related family member 2
Sequence ID:NM_001171976
NM_017675
Entrez Gene ID:54825
Ensembl ID:ENSG00000074276

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 175992335 - 176022769

 Exon Info From UCSC:
NM_001171976
NM_017675

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40146313Full LengthBC130282protocadherin 24

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060145  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001171976 NP_001165447 Q9BYE9  
NM_017675 NP_060145   Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
BC130282 AAI30283 A1L3U4
AK000131 BAA90962 Q9BYE9
AB047004 BAB40777 Q9BYE9
AK315055 BAG37531 A1L3U4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CDHR2 NP_001165447 M.musculus Cdhr2 268663 Gene Info NP_001028536 73
R.norvegicus Cdhr2 291002   XP_214434 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)