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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. H2AFY, H2A histone family, member Y
Sequence ID:NM_001040158
Entrez Gene ID:9555
Ensembl ID:ENSG00000113648

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 134670070 - 134698591

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4077577Full LengthBC013331H2A histone family, member Y
30348703Full LengthBC095406H2A histone family, member Y
4824824IncompleteBC045570H2A histone family, member Y

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_613075  NP_613258  NP_004884  

Protein Infomation

NM_001040158 NP_001035248    
NM_004893 NP_004884   Histone
NM_138609 NP_613075   Histone
NM_138610 NP_613258 O75367 Histone

Related Sequences

AF041483 AAC33433 O75367
AF044286 AAC33434 O75367
AF054174 AAC39908 O75367
BC013331 AAH13331 O75367
BC095406 AAH95406 O75367
AY134746 AAN08620 O75367
EU446955 ABZ92484  
JF432887 ADZ16104  
AK023409 BAB14565 O75367
AB209490 BAD92727 Q59FH0
AK296014 BAG58785 B4DJC3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens H2AFY NP_613258 M.musculus H2afy 26914 Gene Info NP_036145 98
R.norvegicus H2afy 29384   NP_058878 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)