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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL6A2, collagen, type VI, alpha 2
Sequence ID:NM_001849
NM_058174
NM_058175
RefSeqGene ID:NG_008675
Entrez Gene ID:1292
Ensembl ID:ENSG00000142173

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
BETHLEM MYOPATHYCOL6A1
COL6A3
MYOSCLEROSIS, CONGENITAL 
ULLRICH CONGENITAL MUSCULAR DYSTROPHYCOL6A1
COL6A3

Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 47549742 - 47552761

 Exon Info From UCSC:
NM_001849
NM_058174
NM_058175

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5723962Full LengthBC065509collagen, type VI, alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_478055  NP_001840  NP_478054  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001849 NP_001840 P12110 VWA
Collagen
NM_058174 NP_478054   VWA
Collagen
NM_058175 NP_478055   VWA
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
M34570 AAA35621 P12110
AY029208 AAA52056 P12110
AF218010 AAG17252 Q7LCA7
BC002484 AAH02484 Q9BUM6
BC065509 AAH65509 P12110
BT006913 AAP35559 Q9BUM6
EU832207 ACE86777  
EU832113 ACE87463  
X06195 CAA29556 P12110
X15977 CAA34099 P12110
AL096746 CAB46421 P12110
CR536573 CAG38810 Q6FHW5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL6A2 NP_001840 M.musculus Col6a2 12834 Gene Info NP_666119 91
R.norvegicus Col6a2 361821   NP_001094211 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)