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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL23A, ribosomal protein L23a
Sequence ID:NM_000984
Entrez Gene ID:6147
Ensembl ID:ENSG00000198242

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 27047010 - 27050953

NM_000984 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1492704699927047047
502332704772427047907
2344102704974027049916
4114802705058827050657
4819692705088427051372

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4872948Full LengthBC014459ribosomal protein L23a
6716166Full LengthBC058041ribosomal protein L23a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000975  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000984 NP_000975 P62750 Ribosomal_L23
Ribosomal_L23eN

Related Sequences

 
mRNAGenPeptSwissProt
U02032 AAA03341 P62750
L13799 AAA35681 P62750
U43701 AAB03210 P62750
U37230 AAB17510 P62750
BC014459 AAH14459 P62750
BC058041 AAH58041 P62750
AK312123 BAG35059 P62750

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL23A NP_000975 R.norvegicus Rpl23a 360572   NP_001101753 100
A.thaliana RPL23AA 818531   NP_001154565 75
A.thaliana RPL23AB 824694   NP_001078293 74
C.elegans rpl-25.1 180748   NP_508808 65
C.elegans rpl-25.2 172617   NP_492263 65
D.melanogaster RpL23A 38208   NP_523886 65
A.gambiae AgaP_AGAP006037 1276707   XP_316083 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)