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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VPS28, vacuolar protein sorting 28 homolog (S. cerevisiae)
Sequence ID:NM_016208
NM_183057
RefSeqGene ID:NG_029456
Entrez Gene ID:51160
Ensembl ID:ENSG00000160948

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 145648999 - 145652366

 Exon Info From UCSC:
NM_016208
NM_183057

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822758Full LengthBC019321vacuolar protein sorting 28 homolog (S. cerevisiae)
3535787Full LengthBC006485vacuolar protein sorting 28 homolog (S. cerevisiae)
5741129Full LengthBC050713vacuolar protein sorting 28 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057292  NP_898880  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016208 NP_057292 Q9UK41
Q548N1
VPS28
NM_183057 NP_898880   VPS28

Related Sequences

 
mRNAGenPeptSwissProt
AF182844 AAF00499 Q9UK41
Q548N1
BC006485 AAH06485 Q9UK41
Q548N1
BC019321 AAH19321 Q9UK41
Q548N1
BC050713 AAH50713 Q9UK41
AF316887 AAK00314 Q9UK41
Q548N1
AF445417 AAQ04641 Q71MH5
JF432621 ADZ15838  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS28 NP_057292 M.musculus Vps28 66914 Gene Info NP_080118 99
R.norvegicus Vps28 300052   NP_001123964 98
A.gambiae AgaP_AGAP005344 1276052   XP_315357 70
D.melanogaster Vps28 47408   NP_652053 64
C.elegans vps-28 173229   NP_493382 47
A.thaliana VPS28-2 825842   NP_567281 43
A.thaliana VPS28-1 828241   NP_193887 43
N.crassa NCU11209 5847969   XP_001728558 36
S.pombe vps28 2542429   NP_594791 36
S.cerevisiae VPS28 856040   NP_015260 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)