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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTGFRN, prostaglandin F2 receptor negative regulator
Sequence ID:NM_020440
Entrez Gene ID:5738
Ensembl ID:ENSG00000134247

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 117516857 - 117531223

NM_020440 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1186117452688117452873
187555117484336117484704
556969117487300117487713
9701350117491813117492193
13511776117503864117504289
17772196117509532117509951
21972304117516837117516944
23052610117527301117527606
26116160117529422117532971

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862587Full LengthBC152454prostaglandin F2 receptor negative regulator
100068260Full LengthBC168364prostaglandin F2 receptor negative regulator
40012155IncompleteBC139718prostaglandin F2 receptor negative regulator
40012156IncompleteBC098142prostaglandin F2 receptor negative regulator
40036497IncompleteBC114520prostaglandin F2 receptor negative regulator

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065173  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020440 NP_065173 Q9P2B2 ig
V-set

Related Sequences

 
mRNAGenPeptSwissProt
BC098142 AAH98142 Q4QQP8
BC114520 AAI14521 Q1WWL2
BC139718 AAI39719 A4QPA1
BC152454 AAI52455 Q9P2B2
BC168364 AAI68364  
AB037857 BAA92674 Q9P2B2
AB014734 BAB20271 Q9H3U3
AK074637 BAC11104 Q9P2B2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTGFRN NP_065173 M.musculus Ptgfrn 19221 Gene Info NP_035327 90
R.norvegicus Ptgfrn 29602   NP_062116 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)