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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL9A2, Collagen, type IX, alpha 2
Sequence ID:NM_001852
RefSeqGene ID:NG_008031
Entrez Gene ID:1298
Ensembl ID:ENSG00000049089

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
EPIPHYSEAL DYSPLASIA, MULTIPLE, 2 
INTERVERTEBRAL DISC DISEASEASPN
CILP
COL11A1
COL9A3
MMP9
THBS2
STICKLER SYNDROME, TYPE V 

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p33-p32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 40764220 - 40765701

 Exon Info From UCSC:
NM_001852

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020313Full LengthBC136326collagen, type IX, alpha 2
9020314Full LengthBC136327collagen, type IX, alpha 2
5248739IncompleteBC041479collagen, type IX, alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001843  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001852 NP_001843 Q14055 Collagen

Related Sequences

 
mRNAGenPeptSwissProt
M95610 AAA80977 Q14055
BC136326 AAI36327 Q14055
BC136327 AAI36328 Q14055

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL9A2 NP_001843 M.musculus Col9a2 12840 Gene Info NP_031767 91
R.norvegicus Col9a2 362584   NP_001102145 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)