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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. S100A11, S100 calcium binding protein A11
Sequence ID:NM_005620
Entrez Gene ID:6282
Ensembl ID:ENSG00000163191

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 152005137 - 152009446

NM_005620 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
3319152004982152005298
320472152006123152006275
473595152009388152009510

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3140092Full LengthBC001410S100 calcium binding protein A11
3685742Full LengthBC014354S100 calcium binding protein A11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005611  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005620 NP_005611 P31949 efhand
S_100

Related Sequences

 
mRNAGenPeptSwissProt
BC001410 AAH01410 P31949
BC014354 AAH14354 P31949
BT009912 AAP88914 P31949
DQ891746 ABM82672  
DQ894925 ABM85851  
D38583 BAA07597 P31949
D49355 BAA08354 P31949
D50374 BAA23325 P31949
AK312184 BAG35117 B2R5H0
X80201 CAA56492 P31949

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens S100A11 NP_005611 M.musculus S100a11 20195 Gene Info NP_058020 89
R.norvegicus S100a11 445415   NP_001004095 89
M.musculus Gm12854 100502897 Gene Info XP_003084639 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)