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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CTSW, Cathepsin W
Sequence ID:NM_001335
Entrez Gene ID:1521
Ensembl ID:ENSG00000172543

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 65647325 - 65651089

NM_001335 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11296564728365647411
1302146564767265647756
2153286564887765648990
3294836564964565649799
4845806564990065649996
5816616565007965650159
6627876565024965650374
7888526565053965650603
85310626565068565650894
106312966565097865651211

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5221520Full LengthBC048255cathepsin W
5215790IncompleteBC035637cathepsin W (lymphopain)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001326  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001335 NP_001326   Peptidase_C1
Inhibitor_I29

Related Sequences

 
mRNAGenPeptSwissProt
AF013611 AAB82449 P56202
BC048255 AAH48255 P56202

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTSW NP_001326 R.norvegicus Ctsw 293676   NP_001019413 70
M.musculus Ctsw 13041 Gene Info NP_034115 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)