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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARFIP1, ADP-ribosylation factor interacting protein 1
Sequence ID:NM_001025593
NM_001025595
NM_014447
Entrez Gene ID:27236
Ensembl ID:ENSG00000164144

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 153750785 - 153831371

 Exon Info From UCSC:
NM_001025593
NM_001025595
NM_014447

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6176474Full LengthBC103759ADP-ribosylation factor interacting protein 1
8144117Full LengthBC105114ADP-ribosylation factor interacting protein 1
8144119Full LengthBC105116ADP-ribosylation factor interacting protein 1
9052189Full LengthBC143675ADP-ribosylation factor interacting protein 1
9052190Full LengthBC143676ADP-ribosylation factor interacting protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001020766  NP_001020764  NP_055262  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001025593 NP_001020764   Arfaptin
NM_001025595 NP_001020766 P53367 Arfaptin
NM_014447 NP_055262   Arfaptin

Related Sequences

 
mRNAGenPeptSwissProt
U52521 AAA97923 P53367
AF124489 AAD29390 P53367
BC103759 AAI03760 P53367
BC105114 AAI05115 P53367
BC105116 AAI05117 P53367
BC143675 AAI43676 P53367
BC143676 AAI43677 B4E273
AK096509 BAC04806 Q8N8M9
AK290472 BAF83161 P53367
AK299600 BAG61531 B4DS69
AK304141 BAG65035 B4E273
AK316125 BAH14496 B7ZA10

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARFIP1 NP_001020766 R.norvegicus Arfip1 60382   NP_068531 93
M.musculus Arfip1 99889 Gene Info NP_001074562 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)