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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RDH12, retinol dehydrogenase 12 (all-trans/9-cis/11-cis)
Sequence ID:NM_152443
RefSeqGene ID:NG_008321
Entrez Gene ID:145226
Ensembl ID:ENSG00000139988

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
LEBER CONGENITAL AMAUROSIS 13 
LEBER CONGENITAL AMAUROSIS 3SPATA7

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 68189247 - 68201169

NM_152443 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1506816860268168651
511056818756468187618
1063926818914068189426
3935116819118968191307
5126676819181568191970
6687726819276768192871
7739826819369768193906
98311726819590768196096
117318776820046268201166

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5199154Full LengthBC025724retinol dehydrogenase 12 (all-trans/9-cis/11-cis)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_689656  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_152443 NP_689656 Q96NR8 adh_short

Related Sequences

 
mRNAGenPeptSwissProt
BC025724 AAH25724 Q96NR8
HQ448700 ADQ33178  
AK054835 BAB70811 Q96NR8
AK315462 BAG37849 Q96NR8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RDH12 NP_689656 R.norvegicus Rdh12 314264   NP_001101507 87
M.musculus Rdh12 77974 Gene Info NP_084293 86
D.melanogaster CG2065 35707   NP_610309 57
D.melanogaster CG2070 35706   NP_610308 56
D.melanogaster CG30495 246651   NP_724589 54
D.melanogaster CG2064 35708   NP_610310 53
C.elegans dhs-22 179940   NP_506570 41
S.pombe SPCC736.13 2539566   NP_587784 40
A.thaliana AT4G23420 828441   NP_001190811 38
A.thaliana AT4G11410 826745   NP_192880 38
N.crassa NCU09579 3875837   XP_959690 38
S.cerevisiae YOR246C 854420   NP_014889 36
A.thaliana AT4G23430 828442   NP_849428 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)