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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CCL13, chemokine (C-C motif) ligand 13
Sequence ID:NM_005408
Entrez Gene ID:6357
Ensembl ID:ENSG00000181374

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 32683503 - 32685629

NM_005408 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11513268347032683620
1522663268449332684607
2678503268504432685627

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4184250Full LengthBC008621chemokine (C-C motif) ligand 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005399  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005408 NP_005399 Q99616 IL8

Related Sequences

 
mRNAGenPeptSwissProt
U46767 AAB38703 Q99616
U59808 AAD09362 Q99616
BC008621 AAH08621 Q99616
BT007385 AAP36049 Q99616
DQ891497 ABM82423  
DQ894688 ABM85614  
AJ001634 CAA04888 Q99616
X98306 CAA66950 Q99616
Z77650 CAB01111 Q99616
Z77651 CAB01112 O95690
CR450337 CAG29333 Q99616

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCL13 NP_005399 M.musculus Ccl2 20296 Gene Info NP_035463 56
R.norvegicus Ccl2 24770   NP_113718 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)