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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLIC1, Chloride intracellular channel 1
Sequence ID:NM_001288
Entrez Gene ID:1192
Ensembl ID:ENSG00000213719

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 31698362 - 31704313

NM_001288 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
174373169835931698779
4386193169999331700174
6207263170134231701448
7278523170161231701737
8539623170193031702039
96312653170403831704340

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5585323Full LengthBC064527chloride intracellular channel 1
30557606Full LengthBC095469chloride intracellular channel 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001288 NP_001279 O00299  

Related Sequences

 
mRNAGenPeptSwissProt
U93205 AAC25675 O00299
AF034607 AAD20437 O00299
AF109197 AAD26137 O00299
BC064527 AAH64527 O00299
BC095469 AAH95469 O00299
AK223379 BAD97099 Q53FB0
AK314014 BAG36725 Q5SRT3
X87689 CAA61020 O00299
CR542071 CAG46868 O00299

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLIC1 NP_001279 R.norvegicus Clic1 406864   NP_001002807 99
M.musculus Clic1 114584 Gene Info NP_254279 98
A.thaliana DHAR1 838544   NP_001077564 30
A.thaliana DHAR2 843864   NP_177662 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)