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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. JMJD1C, Jumonji domain containing 1C
Sequence ID:NM_032776
NM_004241
Entrez Gene ID:221037
Ensembl ID:ENSG00000171988

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 64926989 - 64967607

 Exon Info From UCSC:
NM_032776
NM_004241

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9052236Full LengthBC143722jumonji domain containing 1C
4456196IncompleteBC047331jumonji domain containing 1C
4695017IncompleteBC067238jumonji domain containing 1C
4702370IncompleteBC065742jumonji domain containing 1C
4703438IncompleteBC026268jumonji domain containing 1C
100062940BC156414jumonji domain containing 1C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004232  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004241 NP_004232   JmjC
NM_032776 NP_116165 Q15652  

Related Sequences

 
mRNAGenPeptSwissProt
L40411 AAC41741 Q15652
BC026268 AAH26268 A0PJE4
BC143722 AAI43723 B7ZLC8
BC156414 AAI56415  
EF068222 ABK64187 Q15652
AB037801 BAA92618 Q15652
AL831917 CAD38578 Q15652
BX537954 CAD97921 Q15652

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens JMJD1C NP_116165 M.musculus Jmjd1c 108829 Gene Info NP_997104 87
R.norvegicus Jmjd1c 171120   XP_228122 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)