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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TAGLN, Transgelin
Sequence ID:NM_001001522
NM_003186
Entrez Gene ID:6876
Ensembl ID:ENSG00000149591

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 117071881 - 117075476

 Exon Info From UCSC:
NM_001001522
NM_003186

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3625512Full LengthBC004927transgelin
30396619Full LengthBC093050transgelin
30398731Full LengthBC092415transgelin
30399241Full LengthBC065829transgelin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003177  NP_001001522  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001522 NP_001001522 Q5U0D2
Q01995
CH
Calponin
NM_003186 NP_003177 Q5U0D2
Q01995
CH
Calponin

Related Sequences

 
mRNAGenPeptSwissProt
M95787 AAA58351 Q01995
M83106 AAA58375 Q01995
BC004927 AAH04927 Q5U0D2
Q01995
BC010946 AAH10946 Q96FG7
BC065829 AAH65829 Q5U0D2
Q01995
BC092415 AAH92415 Q5U0D2
Q01995
BC093050 AAH93050 Q5U0D2
Q01995
BT019648 AAV38454 Q5U0D2
Q01995
BT019649 AAV38455 Q5U0D2
Q01995
EU832233 ACE86803  
EU832140 ACE87490  
D17409 BAA21811 Q5U0D2
Q01995
AB209555 BAD92792 Q59FA5
AK223002 BAD96722 Q53GC9
AK314043 BAG36752 Q5U0D2
CR536484 CAG38723 Q6FI52
CR541681 CAG46482 Q5U0D2
Q01995
CR749612 CAH18406 Q5U0D2
Q01995

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TAGLN NP_001001522 M.musculus Tagln 21345 Gene Info NP_035656 97
R.norvegicus Tagln 25123   NP_113737 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)