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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL13, ribosomal protein L13
Sequence ID:NM_000977
NM_001243130
NM_001243131
NM_033251
Entrez Gene ID:6137
Ensembl ID:ENSG00000167526

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q24.3|17p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 89627345 - 89629683

 Exon Info From UCSC:
NM_000977
NM_033251

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2989021Full LengthBC007563ribosomal protein L13
3459415Full LengthBC013078ribosomal protein L13
3542514Full LengthBC063378ribosomal protein L13
3623320Full LengthBC004954ribosomal protein L13
3688320Full LengthBC007345ribosomal protein L13
3842093Full LengthBC010994ribosomal protein L13
4276103Full LengthBC020804ribosomal protein L13
4298327Full LengthBC007805ribosomal protein L13
4550361Full LengthBC014167ribosomal protein L13
4992467Full LengthBC106058ribosomal protein L13
5111302Full LengthBC027463ribosomal protein L13
5300601Full LengthBC066320ribosomal protein L13
30401947Full LengthBC093063ribosomal protein L13
4054812IncompleteBC006179ribosomal protein L13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_150254  NP_000968  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000977 NP_000968 P26373 Ribosomal_L13e
NM_001243130 NP_001230059    
NM_001243131 NP_001230060    
NM_033251 NP_150254 P26373 Ribosomal_L13e

Related Sequences

 
mRNAGenPeptSwissProt
BC004954 AAH04954 P26373
BC007345 AAH07345 P26373
BC007563 AAH07563 P26373
BC007805 AAH07805 P26373
BC010994 AAH10994 P26373
BC013078 AAH13078 P26373
BC014167 AAH14167 P26373
BC020804 AAH20804 P26373
BC027463 AAH27463 P26373
BC063378 AAH63378 P26373
BC066320 AAH66320 Q6NZ55
BC093063 AAH93063 P26373
BC106058 AAI06059 P26373
DQ891459 ABM82385  
DQ894636 ABM85562  
D28432 BAA05798  
AB062392 BAB93479 P26373
AK290893 BAF83582 A8K4C8
AK127579 BAG54527 A8K4C8
AK294655 BAG57828 B4DGL7
AK297198 BAG59685 B4DLX3
X64707 CAA45963 P26373

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL13 NP_150254 M.musculus Gm12918 100039656 Gene Info XP_001473412 98
M.musculus Gm15710 100040605 Gene Info XP_001475146 98
M.musculus Rpl13 270106 Gene Info NP_058018 98
R.norvegicus Rpl13 81765   NP_112363 97
M.musculus Gm10071 100040416   XP_001474740 97
D.melanogaster RpL13 34329   NP_001033891 64
A.gambiae AgaP_AGAP001805 1281310   XP_321255 62
S.pombe rpl13 2543553   NP_593453 58
C.elegans rpl-13 171949   NP_001021017 57
A.thaliana AT5G23900 832455   NP_197778 56
A.thaliana BBC1 824062   NP_001030831 54
S.cerevisiae RPL13B 855173   NP_013862 51
S.cerevisiae RPL13A 851477   NP_010201 51
N.crassa NCU05554 3876663   XP_960516 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)