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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. INO80B, INO80 complex subunit B
Sequence ID:NM_031288
Entrez Gene ID:83444
Ensembl ID:ENSG00000115274

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 74682247 - 74685071

NM_031288 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11037468219874682300
1042967468253274682724
2974157468294474683062
4165857468322974683398
58612107468446074685084

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5760624Full LengthBC064425INO80 complex subunit B
6527060IncompleteBC050666INO80 complex subunit B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_112578  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_031288 NP_112578 Q9C086 zf-HIT
PAPA-1

Related Sequences

 
mRNAGenPeptSwissProt
BC050666 AAH50666 Q9C086
BC064425 AAH64425 Q9C086
AB054538 BAB21111 Q9C086
AK295889 BAG58684 B4DJ22
AK295901 BAG58693 B4DJ31

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens INO80B NP_112578 M.musculus Ino80b 70020 Gene Info NP_076036 94
R.norvegicus Ino80b 500225   NP_001041698 94
D.melanogaster CG10395 35490   NP_610167 39
A.gambiae AgaP_AGAP006175 1276843   XP_316235 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)