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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SMARCAD1, SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
Sequence ID:NM_001128429
NM_001128430
NM_001254949
NM_020159
NR_045644
RefSeqGene ID:NG_031945
Entrez Gene ID:56916
Ensembl ID:ENSG00000163104

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q22-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 95128872 - 95212441

 Exon Info From UCSC:
NM_001128429
NM_001128430
NM_020159

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5267669Full LengthBC045534SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
4592233IncompleteBC017953SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_064544  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001128429 NP_001121901      
NM_001128430 NP_001121902      
NM_001254949 NP_001241878      
NM_020159 NP_064544 Q9H4L7 EC 3.6.4.12 SNF2_N
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AY008271 AAG16639 Q9H4L7 EC 3.6.4.12
BC017953 AAH17953 Q9H4L7 EC 3.6.4.12
BC045534 AAH45534 Q9H4L7 EC 3.6.4.12
EU446826 ABZ92355    
EU832271 ACE86841    
EU832178 ACE87528    
AB032948 BAA86436 Q9H4L7 EC 3.6.4.12
AK023990 BAB14759 Q9H4L7 EC 3.6.4.12
AK027490 BAB55150 Q9H4L7 EC 3.6.4.12
AK301668 BAH13535 Q9H4L7 EC 3.6.4.12
AL359929 CAB95769 Q9H4L7 EC 3.6.4.12
AL512768 CAC21685 Q9H4L7 EC 3.6.4.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMARCAD1 NP_064544 M.musculus Smarcad1 13990 Gene Info NP_031984 93
R.norvegicus Smarcad1 312398   NP_001101334 93
S.pombe fft2 2539045   NP_587731 45
A.gambiae AgaP_AGAP009980 1279402   XP_319118 44
D.melanogaster CG5899 34311   NP_609320 43
S.pombe fft1 2541983   NP_593325 43
S.pombe fft3 2541531   NP_593617 41
C.elegans helicase 176462   NP_499301 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)