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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CTGF, connective tissue growth factor
Sequence ID:NM_001901
RefSeqGene ID:NG_016131
Entrez Gene ID:1490
Ensembl ID:ENSG00000118523

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q23.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 132269504 - 132270387

NM_001901 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
181399132269318132270699
14001611132271088132271299
16121863132271431132271682
18642086132271909132272131
20872358132272246132272517

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6181580Full LengthBC087839connective tissue growth factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001892  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001901 NP_001892 P29279
Q5M8T4
Cys_knot
TSP_1
VWC
IGFBP

Related Sequences

 
mRNAGenPeptSwissProt
U14750 AAA75378 P29279
M92934 AAA91279 P29279
Q5M8T4
BC087839 AAH87839 P29279
Q5M8T4
AY395801 AAQ95223 P29279
Q5M8T4
AY550024 AAS55639 P29279
Q5M8T4
BT019794 AAV38597 P29279
Q5M8T4
BT019795 AAV38598 P29279
Q5M8T4
AK290884 BAF83573 Q5M8T4
AK315207 BAG37644 B2RCP7
AK092280 BAG52518 B3KRV6
AK125220 BAG54167 B3KWK5
X78947 CAA55544 P29279
Q5M8T4
CR541734 CAG46534 Q6FHL8
CR541759 CAG46559 P29279
Q5M8T4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTGF NP_001892 R.norvegicus Ctgf 64032   NP_071602 92
M.musculus Ctgf 14219 Gene Info NP_034347 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)