Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PNN, pinin, desmosome associated protein
Sequence ID:NM_002687
Entrez Gene ID:5411
Ensembl ID:ENSG00000100941

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 39644452 - 39651414

NM_002687 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12103964438639644595
2112823964528139645352
2833513964573039645798
3524243964661539646687
4255193964679639646890
5205953964704439647119
5967513964829439648449
7528903964852739648665
89136053964970639652420

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5491466Full LengthBC062602pinin, desmosome associated protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002678  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002687 NP_002678 Q9H307 Pinin_SDK_memA
Pinin_SDK_N

Related Sequences

 
mRNAGenPeptSwissProt
U59479 AAB03391 Q15789
U77718 AAB48304 Q9H307
BC062602 AAH62602 Q9H307
AK223612 BAD97332 Q9H307
AK292579 BAF85268 A8K964
AK300164 BAG61946 B4DTD4
AK303136 BAG64240 Q9H307
AK304622 BAG65404 B4E392
Y09703 CAA70874 Q9H307

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PNN NP_002678 M.musculus Pnn 18949 Gene Info NP_032917 94
R.norvegicus Pnn 368070   NP_001102493 94
A.gambiae AgaP_AGAP003316 1279763   XP_319547 35
D.melanogaster Pnn 41185   NP_001097727 33
C.elegans R186.7 179783   NP_506247 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)