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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LRPAP1, low density lipoprotein receptor-related protein associated protein 1
Sequence ID:NM_002337
Entrez Gene ID:4043
Ensembl ID:ENSG00000163956

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4p16.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 3509103 - 3512749

NM_002337 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1749035142893514762
49166735164783516654
66875035178423517924
75190935197603519918
910103035205973520717
1031115235217983521919
1153129735266333526777
1298158635339353534223

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8144077Full LengthBC105074low density lipoprotein receptor-related protein associated protein 1
8327535Full LengthBC112067low density lipoprotein receptor-related protein associated protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002328  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002337 NP_002328 P30533 Alpha-2-MRAP_N
Alpha-2-MRAP_C

Related Sequences

 
mRNAGenPeptSwissProt
M63959 AAA51553 P30533
BC007841 AAH07841 Q96I42
BC105074 AAI05075 P30533
BC112067 AAI12068 P30533
AK222504 BAD96224 P30533
AK222527 BAD96247 P30533
AK292321 BAF85010 A8K8F6
AK312698 BAG35576 B2R6S9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LRPAP1 NP_002328 M.musculus Lrpap1 16976 Gene Info NP_038615 76
R.norvegicus Lrpap1 116565   NP_001162584 76
D.melanogaster CG8507 41205   NP_649950 37
A.gambiae AgaP_AGAP003521 1274170   XP_313261 36
C.elegans C15C8.4 179745   NP_506187 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)