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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL15A1, collagen, type XV, alpha 1
Sequence ID:NM_001855
Entrez Gene ID:1306
Ensembl ID:ENSG00000204291

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q21-q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 101706188 - 101833058

 Exon Info From UCSC:
NM_001855

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063362Full LengthBC157094collagen, type XV, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001846  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001855 NP_001846 P39059 Collagen
Endostatin

Related Sequences

 
mRNAGenPeptSwissProt
L25286 AAA58429 P39059
BC157094 AAI57095  
D21230 BAA04762 P39059
AK095885 BAG53159 B3KTP7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL15A1 NP_001846 M.musculus Col15a1 12819 Gene Info NP_034058 78
R.norvegicus Col15a1 298069   XP_216399 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)