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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEMA4A, sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
Sequence ID:NM_001193300
NM_001193301
NM_001193302
NM_022367
RefSeqGene ID:NG_027683
Entrez Gene ID:64218
Ensembl ID:ENSG00000196189

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 156124161 - 156147543

 Exon Info From UCSC:
NM_001193300
NM_001193301
NM_001193302
NM_022367

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3847802Full LengthBC020974sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071762  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001193300 NP_001180229    
NM_001193301 NP_001180230    
NM_001193302 NP_001180231    
NM_022367 NP_071762 Q9H3S1 Sema
PSI

Related Sequences

 
mRNAGenPeptSwissProt
BC020974 AAH20974 Q9H3S1
AY358531 AAQ88895 Q9H3S1
AK022349 BAB14018 Q9HA40
AB029394 BAB20087 Q9H3S1
AK290353 BAF83042 Q5TCJ5
AK315547 BAG37925 Q9H3S1
AK091127 BAG52288 B3KR76
AK296693 BAG59287 B4DKS5
BX640891 CAE45942 Q6MZT6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEMA4A NP_001180229 R.norvegicus Sema4a 310630   NP_001012078 84
M.musculus Sema4a 20351 Gene Info NP_001156961 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)