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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. USB1, U6 snRNA biogenesis 1
Sequence ID:NM_001195302
NM_001204911
NM_024598
RefSeqGene ID:NG_027698
Entrez Gene ID:79650
Ensembl ID:ENSG00000103005

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 58035304 - 58055514

Transcript StartTranscript EndChromosomal Start Chromosomal End
11815803530458035484
1823485803638258036548
3495325804383258044015
5335865804817658048229
5876925805123758051342
6937765805287558052958
77722535805404458055520

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3641317Full LengthBC004415chromosome 16 open reading frame 57
4025993Full LengthBC006291chromosome 16 open reading frame 57
4302289Full LengthBC007774chromosome 16 open reading frame 57
4541229Full LengthBC021554chromosome 16 open reading frame 57

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001195302 NP_001182231    
NM_001204911 NP_001191840    
NM_024598 NP_078874 Q9BQ65  

Related Sequences

 
mRNAGenPeptSwissProt
BC004415 AAH04415 Q9BQ65
BC006291 AAH06291 Q9BQ65
BC007774 AAH07774 Q9BQ65
BC010099 AAH10099 Q9BQ65
BC021554 AAH21554 Q9BQ65
JF432668 ADZ15885  
AK023216 BAB14469 Q9BQ65
AK293220 BAG56759 B4DDJ8
AK298473 BAG60684 B4DPS2
AK301494 BAG63005 Q9BQ65
AK303121 BAG64227 Q9BQ65

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C16orf57 NP_078874 R.norvegicus RGD1305215 307643   NP_001014035 83
M.musculus AA960436 101985 Gene Info NP_598715 81
D.melanogaster CG16790 41155   NP_649911 41
A.gambiae AgaP_AGAP002220 1269339   XP_307963 38
A.thaliana AT5G51170 835191   NP_568753 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)