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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CARKD, carbohydrate kinase domain containing
Sequence ID:NM_001242881
NM_001242882
NM_001242883
NM_018210
NR_040103
NR_040104
Entrez Gene ID:55739
Ensembl ID:ENSG00000213995

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 111277577 - 111287841

Transcript StartTranscript EndChromosomal Start Chromosomal End
1114111268007111268120
115265111274562111274712
266311111276580111276625
312400111277536111277624
401509111279785111279893
510560111286891111286941
561665111287018111287122
666786111287814111287934
787907111289475111289595
9082659111290588111292339

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4098260Full LengthBC041028carbohydrate kinase domain containing
3507998IncompleteBC005150hypothetical protein FLJ10769

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060680  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001242881 NP_001229810 Q8IW45 EC 4.2.1.93  
NM_001242882 NP_001229811      
NM_001242883 NP_001229812      
NM_018210 NP_060680     Carb_kinase

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF091088 AAC72957 O95333  
AF151071 AAF36157 Q9P0P1  
BC041028 AAH41028 Q8IW45 EC 4.2.1.93
AK001631 BAA91797 Q8IW45 EC 4.2.1.93
AK024260 BAB14863 Q8IW45 EC 4.2.1.93
AK093771 BAG52761 B3KSJ9  
AK296758 BAG59339 B4DKX7  
AK298917 BAG61023 B4DQR1  
AK302117 BAG63496 Q8IW45 EC 4.2.1.93
AK296227 BAH12286 B7Z3Q0  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CARKD NP_001229810 R.norvegicus Carkd 361185   NP_001101872 82
M.musculus Carkd 69225 Gene Info NP_081271 80
A.gambiae AgaP_AGAP011983 1280688   XP_320550 52
S.pombe SPCC61.03 2539500   NP_588194 49
A.thaliana AT5G19150 832035   NP_974811 49
D.melanogaster CG10424 40085   NP_649090 49
N.crassa NCU02513 3881794   XP_965644 46
S.cerevisiae YKL151C 853706   NP_012771 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)