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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NUPL2, nucleoporin like 2
Sequence ID:NM_007342
Entrez Gene ID:11097
Ensembl ID:ENSG00000136243

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7p15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 23238402 - 23240624

NM_007342 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13802322144523221824
3816092322468823224916
6107042322667023226764
7057812323545723235533
7828682323629823236384
8699532323907623239160
95417962323978623240628

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3510844Full LengthBC005327nucleoporin like 2
6453869Full LengthBC107583nucleoporin like 2

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007342 NP_031368 O15504  

Related Sequences

 
mRNAGenPeptSwissProt
U97198 AAC33794 O15504
BC005327 AAH05327 O15504
BC039333 AAH39333 O15504
BC107583 AAI07584 Q3B7J4
BT007409 AAP36077 O15504
AK312991 BAG35828 B2R7I1
AK298183 BAG60454 O15504
AK300113 BAG61908 B4DT96

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NUPL2 NP_031368 R.norvegicus Nupl2 499974   NP_001102687 79
M.musculus Nupl2 231042 Gene Info NP_694732 78
A.gambiae AgaP_AGAP009989 1279410   XP_319126 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)