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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS6, ribosomal protein S6
Sequence ID:NM_001010
Entrez Gene ID:6194
Ensembl ID:ENSG00000137154

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 19376252 - 19380221

NM_001010 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11331937625319376385
1342911937649119376648
2924381937836519378511
4396491937870519378915
6507811937948419379615
7828291938018719380234

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961137Full LengthBC000524ribosomal protein S6
3030319Full LengthBC013296ribosomal protein S6
4698843Full LengthBC027620ribosomal protein S6
4900361Full LengthBC071907ribosomal protein S6
5089456Full LengthBC071908ribosomal protein S6
5481378Full LengthBC094826ribosomal protein S6
3545844IncompleteBC009427ribosomal protein S6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001001  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001010 NP_001001 P62753 Ribosomal_S6e

Related Sequences

 
mRNAGenPeptSwissProt
J03537 AAA60287 P62753
M20020 AAA60288 P62753
BC000524 AAH00524 P62753
BC009427 AAH09427 P62753
BC013296 AAH13296 Q96DV6
BC027620 AAH27620 P62753
BC071907 AAH71907 P62753
BC071908 AAH71908 P62753
BC094826 AAH94826 P62753
DQ891744 ABM82670  
DQ895025 ABM85951  
D28348 BAA05714  
AB062123 BAB93455 P62753
AK291517 BAF84206 A2A3R6
AK311861 BAG34802 A2A3R6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS6 NP_001001 M.musculus Rps6 20104 Gene Info NP_033122 100
R.norvegicus Rps6 29304   NP_058856 100
M.musculus Gm13654 667739   XP_001003926 100
D.melanogaster RpS6 31700   NP_511073 76
N.crassa NCU08502 3879571   XP_963431 71
A.gambiae AgaP_AGAP002919 1273045   XP_311986 70
S.pombe rps601 2542870   NP_592833 70
S.pombe rps602 2543581   NP_594138 70
A.thaliana EMB3010 830900   NP_196598 68
A.thaliana RPS6 829298   NP_194898 68
S.cerevisiae RPS6A 856015   NP_015235 64
S.cerevisiae RPS6B 852479   NP_009740 64
C.elegans rps-6 173260   NP_493435 60
P.falciparum PF13_0228 814195   XP_001350141 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)