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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL12, ribosomal protein L12
Sequence ID:NM_000976
RefSeqGene ID:NG_032008
Entrez Gene ID:6136
Ensembl ID:ENSG00000197958

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 204055404 - 204056042

NM_000976 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
252130209954130210004
53165130210155130210267
166252130210615130210701
253334130211559130211640
335433130211888130211986
434507130213009130213082
508632130213559130213683

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3454522Full LengthBC059950ribosomal protein L12
5108312Full LengthBC050644ribosomal protein L12
5473344Full LengthBC094831ribosomal protein L12
6698283Full LengthBC105603ribosomal protein L12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000967  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000976 NP_000967 P30050 Ribosomal_L11
Ribosomal_L11_N

Related Sequences

 
mRNAGenPeptSwissProt
L06505 AAA36157 P30050
BC050644 AAH50644 P30050
BC059950 AAH59950 P30050
BC094831 AAH94831 P30050
BC105603 AAI05604 P30050
D28443 BAA05809  
AB209471 BAD92708 Q59FI9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL12 NP_000967 M.musculus Rpl12 269261 Gene Info NP_033102 99
R.norvegicus LOC685320 685320   XP_001056336 99
R.norvegicus Rpl12 499782   NP_001102668 99
A.gambiae AgaP_AGAP010065 1279497   XP_319222 82
D.melanogaster RpL12 45329   NP_524819 80
C.elegans rpl-12 178279   NP_502542 74
A.thaliana AT2G37190 818295   NP_181256 70
A.thaliana AT5G60670 836188   NP_200875 69
A.thaliana AT3G53430 824511   NP_190911 69
P.falciparum PFE0850c 812985   XP_001351727 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)