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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ICT1, immature colon carcinoma transcript 1
Sequence ID:NM_001545
Entrez Gene ID:3396
Ensembl ID:ENSG00000167862

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 73008768 - 73017356

NM_001545 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11887300877973008966
1892257301317273013208
2262857301579473015853
2863687301640773016489
3695387301658273016751
5398787301701573017354

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4418983Full LengthBC015335immature colon carcinoma transcript 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001536  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001545 NP_001536 Q14197 EC 3.1.1.29 RF-1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC015335 AAH15335 Q14197 EC 3.1.1.29
BT007111 AAP35775 Q14197 EC 3.1.1.29
DQ890655 ABM81581    
DQ893834 ABM84760    
AK222553 BAD96273 Q14197 EC 3.1.1.29
AK314138 BAG36828 Q14197 EC 3.1.1.29
X81788 CAA57387 Q14197 EC 3.1.1.29

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ICT1 NP_001536 M.musculus Ict1 68572 Gene Info NP_081005 80
R.norvegicus Ict1 303673   XP_221110 80
A.gambiae AgaP_AGAP008425 1277552   XP_317020 45
D.melanogaster CG6094 34446   NP_609416 43
C.elegans R02F2.9 259963   NP_498174 40
A.thaliana AT1G62850 842585   NP_001077760 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)