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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PKP4, plakophilin 4
Sequence ID:NM_001005476
NM_003628
Entrez Gene ID:8502
Ensembl ID:ENSG00000144283

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 159313966 - 159519515

 Exon Info From UCSC:
NM_001005476
NM_003628

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5262792Full LengthBC050308plakophilin 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003619  NP_001005476  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001005476 NP_001005476   Arm
HEAT
NM_003628 NP_003619 Q99569 Arm
HEAT

Related Sequences

 
mRNAGenPeptSwissProt
U81005 AAD00454 O95645
BC050308 AAH50308 Q99569
U60472 AAQ13346 Q6LCG8
X81889 CAA57478 Q99569

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PKP4 NP_003619 R.norvegicus Pkp4 295625   NP_001099952 98
M.musculus Pkp4 227937 Gene Info NP_080637 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)