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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PNPLA1, Patatin-like phospholipase domain containing 1
Sequence ID:NM_001145717
NM_001145716
NM_173676
RefSeqGene ID:NG_032813
Entrez Gene ID:285848
Ensembl ID:ENSG00000180316

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 36210944 - 36276372

 Exon Info From UCSC:
NM_001145717
NM_001145716
NM_173676

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40005581Full LengthBC103905patatin-like phospholipase domain containing 1
40005582Full LengthBC103906patatin-like phospholipase domain containing 1
40005583Full LengthBC103907patatin-like phospholipase domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775947  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145716 NP_001139188    
NM_001145717 NP_001139189 Q8N8W4  
NM_173676 NP_775947 Q8N8W4 Patatin

Related Sequences

 
mRNAGenPeptSwissProt
BC103905 AAI03906 Q8N8W4
BC103906 AAI03907 Q8N8W4
BC103907 AAI03908 Q8N8W4
FJ457781 ACJ70710 B8XXQ3
Q8N8W4
AK096074 BAC04697 Q8N8W4
AM182887 CAJ58679 Q8N8W4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PNPLA1 NP_001139189 M.musculus Pnpla1 433091 Gene Info NP_001030057 65
R.norvegicus Pnpla1 361812   XP_342106 65

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)