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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC35A4, solute carrier family 35, member A4
Sequence ID:NM_080670
Entrez Gene ID:113829
Ensembl ID:ENSG00000176087

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 139944475 - 139948685

NM_080670 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
124139944419139944442
25123139945457139945555
1242657139946149139948682

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961449Full LengthBC009906solute carrier family 35, member A4

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_080670 NP_542401 Q96G79 Nuc_sug_transp

Related Sequences

 
mRNAGenPeptSwissProt
BC009906 AAH09906 Q96G79
AF445025 AAL38586 Q8WYR7
HQ447822 ADQ32306  
AK122601 BAC85488 Q6ZWL2
AK289378 BAF82067 Q96G79
AL833972 CAD38817 Q96G79

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC35A4 NP_542401 R.norvegicus Slc35a4 257647   NP_671481 90
M.musculus Slc35a4 67843 Gene Info NP_001076786 89
A.thaliana AT5G41760 834180   NP_001031992 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)