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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS15, ribosomal protein S15
Sequence ID:NM_001018
RefSeqGene ID:NG_017014
Entrez Gene ID:6209
Ensembl ID:ENSG00000115268

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 1440837 - 1441939

NM_001018 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16514383621438426
6615114388051438890
15238614400171440251
38753114403471440491

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6053159Full LengthBC064908ribosomal protein S15
6744553Full LengthBC105810ribosomal protein S15
40148744Full LengthBC141832ribosomal protein S15

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001009  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001018 NP_001009 P62841 Ribosomal_S19

Related Sequences

 
mRNAGenPeptSwissProt
J02984 AAA36036 P62841
BC064908 AAH64908 P62841
BC105810 AAI05811 P62841
BC141832 AAI41833 P62841
AF145025 AAP97277 P62841

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS15 NP_001009 M.musculus Rps15 20054 Gene Info NP_033117 100
R.norvegicus Rps15 29285   NP_058847 100
A.gambiae AgaP_AGAP001274 1281904   XP_321877 78
D.melanogaster RpS15 36851   NP_725591 77
A.thaliana AT5G43640 834384   NP_199177 75
A.thaliana AT5G09500 830809   NP_196512 74
A.thaliana AT5G09510 830810   NP_196513 74
A.thaliana RPS15 839564   NP_171923 74
C.elegans rps-15 172693   NP_492384 74
S.pombe rps1502 2542912   NP_594357 74
S.pombe rps1501 2538892   NP_587961 74
N.crassa NCU00971 3881300   XP_965164 73
A.thaliana AT5G09490 830808   NP_196511 72
P.falciparum MAL13P1.92 813983   XP_001349914 66
S.cerevisiae RPS15 854117   NP_014602 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)